Book Image

Image Processing with ImageJ

Book Image

Image Processing with ImageJ

Overview of this book

Digital image processing is an increasingly important field across a vast array of scientific disciplines. ImageJ's long history and ever-growing user base makes it a perfect candidate for solving daily tasks involving all kinds of image analysis processes. Image Processing with ImageJ is a practical book that will guide you from the most basic analysis techniques to the fine details of implementing new functionalities through the ImageJ plugin system, all of it through the use of examples and practical cases. ImageJ is an excellent public domain imaging analysis platform that can be very easily used for almost all your image processing needs. Image Processing with ImageJ will start by showing you how to open a number of different images, become familiar with the different options, and perform simple analysis operations using the provided image samples. You will also learn how to make modifications through ImageJ filters and how to make local measurements using the selections system. You will also find the instructions necessary to record all the steps you perform so they can be saved and re-run on the same image to ensure analysis reproducibility. Finally, you will get to know some different ImageJ plugins and will learn how to implement your own.
Table of Contents (13 chapters)
Image Processing with ImageJ
Credits
About the Authors
About the Reviewers
www.PacktPub.com
Preface
Index

Filters


First of all, remember, a digital image is a matrix in which each cell contains a different value, a number or group of numbers (think RGB images, which contains a triplet). That number defines an intensity within a certain scale (8 bit, 16 bit, 32 bit images) and certain conventions (black is 0, white is the maximum value). When you change the value of a pixel, it reflects in a change in the grayscale or color representation on the screen. Filters are mathematical functions that generate new pixel values from old ones. There are many applications to this, from noise removal to edge detection.

Image filtering in the spatial domain

The process of assigning new pixel values depending on the values of each pixel and its neighbors is called filtering in the spatial domain, and is achieved through a mathematical operation called convolution. In our context, it consists of taking the original image and a second, smaller one, called kernel or mask. The values in the mask are called weights...