Book Image

Image Processing with ImageJ

Book Image

Image Processing with ImageJ

Overview of this book

Digital image processing is an increasingly important field across a vast array of scientific disciplines. ImageJ's long history and ever-growing user base makes it a perfect candidate for solving daily tasks involving all kinds of image analysis processes. Image Processing with ImageJ is a practical book that will guide you from the most basic analysis techniques to the fine details of implementing new functionalities through the ImageJ plugin system, all of it through the use of examples and practical cases. ImageJ is an excellent public domain imaging analysis platform that can be very easily used for almost all your image processing needs. Image Processing with ImageJ will start by showing you how to open a number of different images, become familiar with the different options, and perform simple analysis operations using the provided image samples. You will also learn how to make modifications through ImageJ filters and how to make local measurements using the selections system. You will also find the instructions necessary to record all the steps you perform so they can be saved and re-run on the same image to ensure analysis reproducibility. Finally, you will get to know some different ImageJ plugins and will learn how to implement your own.
Table of Contents (13 chapters)
Image Processing with ImageJ
Credits
About the Authors
About the Reviewers
www.PacktPub.com
Preface
Index

Color and multichannel images


Color images can be manipulated in different ways in ImageJ. The most basic option would be to use a pseudo color image, which is an 8-bit image in which every intensity value has a corresponding RGB color, resulting in 256 colors. This color mode is called pseudo color or false color because the color correspondence can be manually changed, depending on the color palette (or the Lookup Table) that we select. The GIF image format stores 8-bit images with the color palette included, so when we open a file in this format it will be displayed in color, although values for every pixel will be limited to 256 possibilities. Open the tuberculosis_sample.gif file again using the File | Open menu option. Now navigate to Image | Lookup Tables. In this menu, many LUTs are offered to be selected. Choose the one named Fire and the result will be:

16-bit image with a Lookup Table applied (Fire LUT) in order to display it with pseudo color

Tip

We can apply an 8-bit LUT to a 16...