Book Image

Mastering Parallel Programming with R

By : Simon R. Chapple, Terence Sloan, Thorsten Forster, Eilidh Troup
Book Image

Mastering Parallel Programming with R

By: Simon R. Chapple, Terence Sloan, Thorsten Forster, Eilidh Troup

Overview of this book

R is one of the most popular programming languages used in data science. Applying R to big data and complex analytic tasks requires the harnessing of scalable compute resources. Mastering Parallel Programming with R presents a comprehensive and practical treatise on how to build highly scalable and efficient algorithms in R. It will teach you a variety of parallelization techniques, from simple use of R’s built-in parallel package versions of lapply(), to high-level AWS cloud-based Hadoop and Apache Spark frameworks. It will also teach you low level scalable parallel programming using RMPI and pbdMPI for message passing, applicable to clusters and supercomputers, and how to exploit thousand-fold simple processor GPUs through ROpenCL. By the end of the book, you will understand the factors that influence parallel efficiency, including assessing code performance and implementing load balancing; pitfalls to avoid, including deadlock and numerical instability issues; how to structure your code and data for the most appropriate type of parallelism for your problem domain; and how to extract the maximum performance from your R code running on a variety of computer systems.
Table of Contents (13 chapters)

Summary


Right, it's time to take a wee breather. In this chapter, we covered the basic concepts and the API for MPI. You learned how to utilize both the Rmpi and pbdMPI packages in conjunction with OpenMPI. We explored a number of simple examples of both blocking and non-blocking communications in R and also introduced the collective communications operations in MPI. We looked into the low-level implementation of Rmpi package's own master/worker scheme to manage the execution of R code in parallel. You now have sufficient grounding to write a wide variety of highly scalable MPI programs in R.

In the next chapter, we will complete our discussion on MPI, work through a particular MPI example that introduces spatial grid-style parallelism, and cover the remaining slightly more esoteric MPI API functions available to us in R.