Book Image

Mastering Parallel Programming with R

By : Simon R. Chapple, Terence Sloan, Thorsten Forster, Eilidh Troup
Book Image

Mastering Parallel Programming with R

By: Simon R. Chapple, Terence Sloan, Thorsten Forster, Eilidh Troup

Overview of this book

R is one of the most popular programming languages used in data science. Applying R to big data and complex analytic tasks requires the harnessing of scalable compute resources. Mastering Parallel Programming with R presents a comprehensive and practical treatise on how to build highly scalable and efficient algorithms in R. It will teach you a variety of parallelization techniques, from simple use of R’s built-in parallel package versions of lapply(), to high-level AWS cloud-based Hadoop and Apache Spark frameworks. It will also teach you low level scalable parallel programming using RMPI and pbdMPI for message passing, applicable to clusters and supercomputers, and how to exploit thousand-fold simple processor GPUs through ROpenCL. By the end of the book, you will understand the factors that influence parallel efficiency, including assessing code performance and implementing load balancing; pitfalls to avoid, including deadlock and numerical instability issues; how to structure your code and data for the most appropriate type of parallelism for your problem domain; and how to extract the maximum performance from your R code running on a variety of computer systems.
Table of Contents (13 chapters)

Chapter 3. Advanced Message Passing

We continue our tour of MPI in this chapter by focusing on the more advanced aspects of message passing. In particular, we explore a specific structured approach to distributed computing for efficiently processing spatially organized data, known as Grid Parallelism. We will work through a detailed example of image processing that will illustrate the use of non-blocking communications, including localized patterns of inter-process message exchange, based on appropriately configuring an Rmpi master/worker cluster.

In this chapter, we will cover additional MPI API calls, including MPI_Cart_create(), MPI_Cart_rank(), MPI_Probe, and MPI_Test, and briefly revisit parLapply() which we first encountered in Chapter 1, Simple Parallelism with R (and even snow gets a mention).

So, without further ado, let's discover how to perform spatially oriented parallel processing using MPI in R.