Book Image

Mastering Parallel Programming with R

By : Simon R. Chapple, Terence Sloan, Thorsten Forster, Eilidh Troup
Book Image

Mastering Parallel Programming with R

By: Simon R. Chapple, Terence Sloan, Thorsten Forster, Eilidh Troup

Overview of this book

R is one of the most popular programming languages used in data science. Applying R to big data and complex analytic tasks requires the harnessing of scalable compute resources. Mastering Parallel Programming with R presents a comprehensive and practical treatise on how to build highly scalable and efficient algorithms in R. It will teach you a variety of parallelization techniques, from simple use of R’s built-in parallel package versions of lapply(), to high-level AWS cloud-based Hadoop and Apache Spark frameworks. It will also teach you low level scalable parallel programming using RMPI and pbdMPI for message passing, applicable to clusters and supercomputers, and how to exploit thousand-fold simple processor GPUs through ROpenCL. By the end of the book, you will understand the factors that influence parallel efficiency, including assessing code performance and implementing load balancing; pitfalls to avoid, including deadlock and numerical instability issues; how to structure your code and data for the most appropriate type of parallelism for your problem domain; and how to extract the maximum performance from your R code running on a variety of computer systems.
Table of Contents (13 chapters)

Chapter 5. The Supercomputer in Your Laptop

In this chapter, we will unlock the parallel processing capacity of Graphics Processing Unit (GPU) from R, giving us access to, potentially, gigaflops and teraflops of performance for certain types of vector calculations. To do this, we need to roll up our sleeves, get technical, and step well beyond our comfort zone in R.

In this chapter, we will encounter new concepts, frameworks, and languages, including:

  • OpenCL

  • ROpenCL – The R package that provides an interface abstraction for OpenCL

  • Single Instruction Multiple Data (SIMD) vector parallelism

  • Writing code in C (C99) for execution directly from within R

  • Developing an ROpenCL implementation of the distance measured as typically used in clustering algorithms

It's time to don your lab coat and your tin foil hat…