Book Image

Gephi Cookbook

Book Image

Gephi Cookbook

Overview of this book

Table of Contents (18 chapters)
Gephi Cookbook
Credits
About the Author
Acknowledgments
About the Reviewers
www.PacktPub.com
Preface
Index

Exploring biological networks – the C. Elegans neural network dataset


C. Elegans, which is short for Caenorhabditis Elegans, is a free-living roundworm that lives in soil environments. Since 1960s, this organism has been widely studied by scientists because of the fact that it is the simplest organism with a nervous system. In this recipe, we will explore the neuron network of C. Elegans and study one of the most common types of networks called the small-world network; these are very often found in the world around us.

Getting ready

To get started with this recipe, download and unzip the C. Elegans neural network data from http://gephi.org/datasets/celegans.gexf.zip.

How to do it…

To explore the C. Elegans neural network data and investigate its interesting properties, follow these steps:

  1. Open Gephi. Click on File in the menu bar and then Open in the drop-down menu.

  2. In the Open dialog window, navigate to the folder where you unzipped the C. Elegans dataset and click on the celegans.gexf file....