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Learning SciPy for Numerical and Scientific Computing Second Edition

Learning SciPy for Numerical and Scientific Computing Second Edition - Second Edition

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Learning SciPy for Numerical and Scientific Computing Second Edition

Learning SciPy for Numerical and Scientific Computing Second Edition

4.3 (10)
Buy this Book

Overview of this book

This book targets programmers and scientists who have basic Python knowledge and who are keen to perform scientific and numerical computations with SciPy.
Table of Contents (10 chapters)
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Preface
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Preface
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What this book covers
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What you need for this book
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Who this book is for
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Conventions
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Reader feedback
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1
1. Introduction to SciPy
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1. Introduction to SciPy
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What is SciPy?
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Installing SciPy
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SciPy organization
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How to find documentation
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Scientific visualization
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How to open IPython Notebooks
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Summary
2
2. Working with the NumPy Array As a First Step to SciPy
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2. Working with the NumPy Array As a First Step to SciPy
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Object essentials
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Using datatypes
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Indexing and slicing arrays
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The array object
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Array routines
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Summary
3
3. SciPy for Linear Algebra
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3. SciPy for Linear Algebra
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Vector creation
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Vector operations
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Creating a matrix
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Matrix methods
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Summary
4
4. SciPy for Numerical Analysis
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4. SciPy for Numerical Analysis
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The evaluation of special functions
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Convenience and test functions
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Univariate polynomials
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The gamma function
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The Riemann zeta function
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Airy and Bairy functions
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The Bessel and Struve functions
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Other special functions
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Interpolation
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Regression
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Optimization
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Integration
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Ordinary differential equations
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Lorenz attractors
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Summary
5
5. SciPy for Signal Processing
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5. SciPy for Signal Processing
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Discrete Fourier Transforms
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Signal construction
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Filters
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Summary
6
6. SciPy for Data Mining
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6. SciPy for Data Mining
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Descriptive statistics
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Distributions
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Interval estimation, correlation measures, and statistical tests
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Distribution fitting
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Distances
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Clustering
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Summary
7
7. SciPy for Computational Geometry
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7. SciPy for Computational Geometry
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The structural model of oxides
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A finite element solver for Laplace's equation
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Summary
8
8. Interaction with Other Languages
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8. Interaction with Other Languages
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Interaction with Fortran
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Interaction with C/C++
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Interaction with MATLAB/Octave
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Summary
9
Index
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Index

Interval estimation, correlation measures, and statistical tests

We briefly covered interval estimation as an introductory example of SciPy: bayes_mvs, in Chapter 1, Introduction to SciPy, with very simple syntax, as follows:

bayes_mvs(data, alpha=0.9)

It returns a tuple of three arguments in which each argument has the form (center, (lower, upper)). The first argument refers to the mean; the second refers to the variance; and the third to the standard deviation. All intervals are computed according to the probability given by alpha, which is 0.9 by default.

We may use the linregress routine to compute the regression line of some two-dimensional data x, or two sets of one-dimensional data, x and y. We may compute different correlation coefficients, with their corresponding p-values, as well. We have the Pearson correlation coefficient (pearsonr), Spearman's rank-order correlation (spearmanr), point biserial correlation (pointbiserialr), and Kendall's tau for ordinal data (kendalltau). In all...

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