Book Image

Scientific Computing with Scala

By : Vytautas Jancauskas
Book Image

Scientific Computing with Scala

By: Vytautas Jancauskas

Overview of this book

Scala is a statically typed, Java Virtual Machine (JVM)-based language with strong support for functional programming. There exist libraries for Scala that cover a range of common scientific computing tasks – from linear algebra and numerical algorithms to convenient and safe parallelization to powerful plotting facilities. Learning to use these to perform common scientific tasks will allow you to write programs that are both fast and easy to write and maintain. We will start by discussing the advantages of using Scala over other scientific computing platforms. You will discover Scala packages that provide the functionality you have come to expect when writing scientific software. We will explore using Scala's Breeze library for linear algebra, optimization, and signal processing. We will then proceed to the Saddle library for data analysis. If you have experience in R or with Python's popular pandas library you will learn how to translate those skills to Saddle. If you are new to data analysis, you will learn basic concepts of Saddle as well. Well will explore the numerical computing environment called ScalaLab. It comes bundled with a lot of scientific software readily available. We will use it for interactive computing, data analysis, and visualization. In the following chapters, we will explore using Scala's powerful parallel collections for safe and convenient parallel programming. Topics such as the Akka concurrency framework will be covered. Finally, you will learn about multivariate data visualization and how to produce professional-looking plots in Scala easily. After reading the book, you should have more than enough information on how to start using Scala as your scientific computing platform
Table of Contents (16 chapters)
Scientific Computing with Scala
Credits
About the Author
About the Reviewer
www.PacktPub.com
Preface
Index

Andrews curve


Let's start with something easy. We will see how to use Andrews curve to visualize our Iris data. Andrews curve is a very simple visualization method yet it is sometimes an effective way to spot clusters in multi-dimensional data.

The way it works is really simple. Each row is plotted as a separate curve. Suppose we have a row , where is the value of the ith attribute for that row. Then, the curve corresponding to this row is given here:

, where .

Therefore, each row defines a finite Fourier series. This curve is then plotted. We will have as many curves as there are rows in our file. So in our case there will be 150 curves.

The curves that form clusters in the data will then form groups in the plot as well. This plot can sometimes be useful in exploratory data analysis. It may allow one to identify clusters in the data. It is especially useful because it works well with large numbers of attributes. The following is our implementation of the Andrews curve:

import org.jfree.chart...