Book Image

Python Data Science Essentials - Second Edition

By : Luca Massaron, Alberto Boschetti
Book Image

Python Data Science Essentials - Second Edition

By: Luca Massaron, Alberto Boschetti

Overview of this book

Fully expanded and upgraded, the second edition of Python Data Science Essentials takes you through all you need to know to suceed in data science using Python. Get modern insight into the core of Python data, including the latest versions of Jupyter notebooks, NumPy, pandas and scikit-learn. Look beyond the fundamentals with beautiful data visualizations with Seaborn and ggplot, web development with Bottle, and even the new frontiers of deep learning with Theano and TensorFlow. Dive into building your essential Python 3.5 data science toolbox, using a single-source approach that will allow to to work with Python 2.7 as well. Get to grips fast with data munging and preprocessing, and all the techniques you need to load, analyse, and process your data. Finally, get a complete overview of principal machine learning algorithms, graph analysis techniques, and all the visualization and deployment instruments that make it easier to present your results to an audience of both data science experts and business users.
Table of Contents (13 chapters)
Python Data Science Essentials - Second Edition
Credits
About the Authors
About the Reviewer
www.PacktPub.com
Preface

Graph loading, dumping, and sampling


Beyond NetworkX, graphs and networks can be generated and analyzed with other software. One of the best open source multi-platform software that can be used for their analysis is named Gephi. It's a visual tool and it doesn't require programming skills. It's freely available at http://gephi.github.io.

As in machine learning datasets, even graphs have standard formats for their storing, loading, and exchanging. In this way, you can create a graph with NetworkX, dump it to a file and then load and analyze it with Gephi.

One of the most frequently used formats is Graph Modeling Language (GML). Now, let's see how to dump a graph to GML file:

In:
dump_file_base = "dumped_graph"
# Be sure the dump_file file doesn't exist
def remove_file(filename):
import os
if os.path.exists(filename):
   os.remove(filename)
In: G = nx.krackhardt_kite_graph()
In:
# GML format write and read
GML_file = dump_file_base + '.gml'
remove_file(GML_file)
nx.write_gml(G, GML_file)
G2...