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Deep Learning for Genomics
By :
Deep Learning for Genomics
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Overview of this book
Deep learning has shown remarkable promise in the field of genomics; however, there is a lack of a skilled deep learning workforce in this discipline. This book will help researchers and data scientists to stand out from the rest of the crowd and solve real-world problems in genomics by developing the necessary skill set. Starting with an introduction to the essential concepts, this book highlights the power of deep learning in handling big data in genomics. First, you’ll learn about conventional genomics analysis, then transition to state-of-the-art machine learning-based genomics applications, and finally dive into deep learning approaches for genomics. The book covers all of the important deep learning algorithms commonly used by the research community and goes into the details of what they are, how they work, and their practical applications in genomics. The book dedicates an entire section to operationalizing deep learning models, which will provide the necessary hands-on tutorials for researchers and any deep learning practitioners to build, tune, interpret, deploy, evaluate, and monitor deep learning models from genomics big data sets.
By the end of this book, you’ll have learned about the challenges, best practices, and pitfalls of deep learning for genomics.
Table of Contents (18 chapters)
Preface
Part 1 – Machine Learning in Genomics
Chapter 1: Introducing Machine Learning for Genomics
Chapter 2: Genomics Data Analysis
Chapter 3: Machine Learning Methods for Genomic Applications
Part 2 – Deep Learning for Genomic Applications
Chapter 4: Deep Learning for Genomics
Chapter 5: Introducing Convolutional Neural Networks for Genomics
Chapter 6: Recurrent Neural Networks in Genomics
Chapter 7: Unsupervised Deep Learning with Autoencoders
Chapter 8: GANs for Improving Models in Genomics
Part 3 – Operationalizing models
Chapter 9: Building and Tuning Deep Learning Models
Chapter 10: Model Interpretability in Genomics
Chapter 11: Model Deployment and Monitoring
Chapter 12: Challenges, Pitfalls, and Best Practices for Deep Learning in Genomics
Index
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