Book Image

Bioinformatics with Python Cookbook

By : Tiago R Antao, Tiago Antao
Book Image

Bioinformatics with Python Cookbook

By: Tiago R Antao, Tiago Antao

Overview of this book

Table of Contents (16 chapters)
Bioinformatics with Python Cookbook
Credits
About the Author
About the Reviewers
www.PacktPub.com
Preface
Index

Chapter 2. Next-generation Sequencing

In this chapter, we will cover the following recipes:

  • Accessing GenBank and moving around NCBI databases

  • Performing basic sequence analysis

  • Working with modern sequence formats

  • Working with alignment data

  • Analyzing data in variant call format (VCF)

  • Studying genome accessibility and filtering SNP data