A typical analysis in population genetics was the one popularized by the program Structure (http://pritchardlab.stanford.edu/structure.html), which is used to study the population structure. This type of software is used to infer how many populations exist (or how many ancestral populations generate the current population) and how to identify potential migrants and admixed individuals. As Structure was developed quite some years ago when much less markers were genotyped (at that time, mostly a handful of microsatellites) and faster versions were developed, including one from the same laboratory called fastStructure (http://rajanil.github.io/fastStructure/). Here, we will use Python to interface with a program of the same type developed at UCLA called Admixture (https://www.genetics.ucla.edu/software/admixture/).
Bioinformatics with Python Cookbook
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Bioinformatics with Python Cookbook
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Overview of this book
Table of Contents (16 chapters)
Bioinformatics with Python Cookbook
Credits
About the Author
About the Reviewers
www.PacktPub.com
Preface
Free Chapter
Python and the Surrounding Software Ecology
Next-generation Sequencing
Working with Genomes
Population Genetics
Population Genetics Simulation
Phylogenetics
Using the Protein Data Bank
Other Topics in Bioinformatics
Python for Big Genomics Datasets
Index
Customer Reviews