Book Image

Mastering Parallel Programming with R

By : Simon R. Chapple, Terence Sloan, Thorsten Forster, Eilidh Troup
Book Image

Mastering Parallel Programming with R

By: Simon R. Chapple, Terence Sloan, Thorsten Forster, Eilidh Troup

Overview of this book

R is one of the most popular programming languages used in data science. Applying R to big data and complex analytic tasks requires the harnessing of scalable compute resources. Mastering Parallel Programming with R presents a comprehensive and practical treatise on how to build highly scalable and efficient algorithms in R. It will teach you a variety of parallelization techniques, from simple use of R’s built-in parallel package versions of lapply(), to high-level AWS cloud-based Hadoop and Apache Spark frameworks. It will also teach you low level scalable parallel programming using RMPI and pbdMPI for message passing, applicable to clusters and supercomputers, and how to exploit thousand-fold simple processor GPUs through ROpenCL. By the end of the book, you will understand the factors that influence parallel efficiency, including assessing code performance and implementing load balancing; pitfalls to avoid, including deadlock and numerical instability issues; how to structure your code and data for the most appropriate type of parallelism for your problem domain; and how to extract the maximum performance from your R code running on a variety of computer systems.
Table of Contents (13 chapters)

About ARCHER


ARCHER has more than 100,000 cores (http://www.archer.ac.uk/about-archer/). The following Figure 1 shows some of the physical cabinets that comprise the ARCHER supercomputer, occupying an entire dedicated room in a purpose-built facility.

Figure 1: The ARCHER supercomputer at Edinburgh Parallel Computing Centre.

Figure 2 illustrates how these thousands of cores are organized across the individual cabinets. Notice how each of the individual Intel-based compute node processors has 2x12 cores and 64 Gb of memory.

Figure 2: The composition of an ARCHER cabinet.