Book Image

Machine Learning in Biotechnology and Life Sciences

By : Saleh Alkhalifa
Book Image

Machine Learning in Biotechnology and Life Sciences

By: Saleh Alkhalifa

Overview of this book

The booming fields of biotechnology and life sciences have seen drastic changes over the last few years. With competition growing in every corner, companies around the globe are looking to data-driven methods such as machine learning to optimize processes and reduce costs. This book helps lab scientists, engineers, and managers to develop a data scientist's mindset by taking a hands-on approach to learning about the applications of machine learning to increase productivity and efficiency in no time. You’ll start with a crash course in Python, SQL, and data science to develop and tune sophisticated models from scratch to automate processes and make predictions in the biotechnology and life sciences domain. As you advance, the book covers a number of advanced techniques in machine learning, deep learning, and natural language processing using real-world data. By the end of this machine learning book, you'll be able to build and deploy your own machine learning models to automate processes and make predictions using AWS and GCP.
Table of Contents (17 chapters)
1
Section 1: Getting Started with Data
6
Section 2: Developing and Training Models
13
Section 3: Deploying Models to Users

What this book covers

Chapter 1, Introducing Machine Learning for Biotechnology, provides a brief introduction to the field of biotechnology and some of the areas in which machine learning can be applied, in addition to some of the technology this book will use.

Chapter 2, Introducing Python and the Command Line, comprises a summary of some of the must-know techniques and commands in Bash and the Python programming language, in addition to some of the most common Python libraries.

Chapter 3, Getting Started with SQL and Relational Databases, is where you will gain knowledge of the SQL querying language and learn how to create a remote database using MySQL and AWS RDS.

Chapter 4, Visualizing Data with Python, introduces you to some of the most common methods for visualizing and representing data using the Python programming language.

Chapter 5, Understanding Machine Learning, comprises some of the most important elements of standard machine learning pipelines, introducing you to supervised and unsupervised methods, as well as saving models for future use.

Chapter 6, Unsupervised Machine Learning, is where you will learn about unsupervised models and dive into clustering and dimensionality reduction methods with tutorials relating to breast cancer.

Chapter 7, Supervised Machine Learning, is where you will learn about supervised learning models and dive into classification and regression methods.

Chapter 8, Understanding Deep Learning, provides an overview of the deep learning space, where we will explore the elements of a deep learning model, as well as two tutorials relating to protein classification using Keras and anomaly detection using AWS.

Chapter 9, Natural Language Processing, teaches you some of the most common NLP options as we explore popular libraries and tools, in addition to two tutorials relating to clustering as well as semantic searching using transformers.

Chapter 10, Exploring Time Series Analysis, explores data using a time-based approach in which we break down the components of a time series dataset and develop two forecasting models using Prophet and LSTMs.

Chapter 11, Deploying Models with Flask Applications, provides an introduction to one of the most popular frameworks for deploying models and applications to end users.

Chapter 12, Deploying Applications to the Cloud, provides an introduction to two of the most popular cloud computing platforms, in addition to three tutorials allowing users to deploy their work to AWS LightSail, GCP AppEngine, and GitHub.