Index
A
- aesthetic attributes
- aesthetic mapping
- about / Advanced aesthetic mapping
- in ggplot2 / Typical aesthetic mappings available in ggplot2
- to new stat variables / Mapping the aesthetic to new stat variables
- axis
- transformation / Axis transformations
- modifying, themes used / Themes for the axis and title
- axis labels
- about / The plot title and axis labels
- modifying / The plot title and axis labels
- axis scales
- about / Axis scales
- modifying / Axis scales
- discrete axis / The discrete axis
- continuous axis / The continuous axis
- axis, transformation / Axis transformations
- axis tick marks
- removing / Axis transformations
B
- bar charts
- about / Bar charts, Bar charts
- URL / Further reading
- borders() function
- URL / Further reading
- box plots
- about / Boxplots, Boxplots
- URL / Further reading
- bubble charts
- about / Bubble charts and dot plots
- URL / Further reading
- bullseye chart / A bullseye chart
C
- categorical variables
- and mapping continuous, differences / Difference in mapping continuous and categorical variables
- Comprehensive R Archive Network (CRAN)
- about / Getting ggplot2 up and running
- continuous axis
- modifying / The continuous axis
- coordinates
- coordinate system
- about / The coordinate system
- functions / The coordinate system
- coord_cartesian(xlim, ylim function / The coordinate system
- coord_fixed(ratio , xlim , ylim) function / The coordinate system
- coord_flip(…) function / The coordinate system
- coord_polar(theta , start , direction) function / The coordinate system
- coord_fixed() function / The coordinate system
- coord_map() function
- URL / Further reading
- coxcomb diagram / A coxcomb diagram
D
- density plots
- about / Histograms and density plots
- URL / Further reading
- discrete axis
- modifying / The discrete axis
- order of discrete variables, reversing / The discrete axis
- dot plots
- about / Bubble charts and dot plots
E
- Eclipse
- URL / Eclipse and StatET
- about / Eclipse and StatET
- Emacs
- URL / Emacs and ESS
- about / Emacs and ESS
- Emacs Speaks Statistics (ESS)
- about / Emacs and ESS
- URL / Emacs and ESS
F
- faceting
- about / ggplot2 and the grammar of graphics, Introduction to faceting, Faceting
- panel orientation, modifying / Introduction to faceting
- grid faceting / Grid faceting
- wrap faceting / Wrap faceting
- facets
- used, for adding text / Add text and reference lines with facets
- used, for adding reference lines / Add text and reference lines with facets
- using, with themes / Themes with facets
- facet_grid() function / Grid faceting
- facet_wrap() function / Wrap faceting
G
- geom attributes / Boxplots
- geometric objects
- geom functions
- names, searching / Geometric
- geom functions, geometry attributes
- geom_abline / Geometric
- geom_area / Geometric
- geom_bar / Geometric
- geom_blank / Geometric
- geom_boxplot / Geometric
- geom_density / Geometric
- geom_dotplot / Geometric
- geom_errorbar / Geometric
- geom_errorbarh / Geometric
- geom_histogram / Geometric
- geom_hline / Geometric
- geom_jitter / Geometric
- geom_line / Geometric
- geom_path / Geometric
- geom_point / Geometric
- geom_pointrange / Geometric
- geom_ribbon / Geometric
- geom_smooth / Geometric
- geom_text / Geometric
- geom_tile / Geometric
- geom_vline / Geometric
- geom_tile() function
- URL / Further reading
- GGally
- scatterplot matrix with / Scatterplot matrix with GGally
- ggmap
- used, for plotting maps / Plotting maps with ggplot2 and ggmap
- used, for representing maps / Representing maps with ggmap
- ggpairs() function
- URL / Further reading
- ggplot() function
- and qplot() function, equivalent coding / Equivalent coding between qplot and ggplot
- ggplot2
- about / Getting ggplot2 up and running
- running / Getting ggplot2 up and running
- packages / Packages in R
- grammar, of graphics / ggplot2 and the grammar of graphics
- layers / Layers in ggplot2
- aesthetic mappings / Typical aesthetic mappings available in ggplot2
- URL / Adding text and reference lines to plots, Further reading, Exploring scales
- references / Further reading
- used, for plotting maps / Plotting maps with ggplot2 and ggmap
- used, for representing mapping / Mapping representations with ggplot2 and maps
- used, for plotting heatmaps / Plotting heatmaps with ggplot2
- grammar, of graphics
- Graphical User Interface (GUI)
- graphics package
- about / Graphics and standard plots
- implementing / Graphics and standard plots
- scatter plot, generating with points of all data / Scatterplots with individual data points
- scatter plot, generating with line of one tree / Scatterplots with the line of one tree
- scatter plot, generating with line and points of one tree / Scatterplots with the line and points of one tree
- boxplot, generating / Boxplots of the orange dataset
- boxplot, generating with observations / Boxplots with individual observations
- histogram, generating / Histograms of the orange dataset
- histogram, generating with vertical bar on median value / Histograms with the reference line at the median value in red
- graphics tools
- reference link / The plotting environments in R
- grayscale plots
- creating / Exploring scales
- grid-based graphics
- grid faceting / Grid faceting
H
- heatmaps
- plotting, with ggplot2 / Plotting heatmaps with ggplot2
- histograms
I
- I() function / Introduction to aesthetic attributes
- Integrated Development Environment (IDE)
- about / The Integrated Development Environment
- RStudio / RStudio
- Eclipse / Eclipse and StatET
- StatET / Eclipse and StatET
- Emacs / Emacs and ESS
- Emacs Speaks Statistics (ESS) / Emacs and ESS
- Inter-Quartile Range (IQR) / Boxplots
L
- lattice package
- about / Lattice and Trellis plots
- example / Lattice and Trellis plots
- scatter plot, generating with points / Scatterplots with individual observations
- scatter plot, generating with faceting / Scatterplots of the orange dataset with faceting
- scatter plot, faceting with line and points / Faceting scatterplots with line and points
- scatter plot, generating with grouping data / Scatterplots with grouping data
- boxplot, generating / Boxplots of the orange dataset
- histogram, generating with default options / Histograms of the orange dataset
- histogram, generating with vertical bar on median value / Histograms with the reference line at the median value in red
- layered grammar
- components / Components of layered grammar
- layers, ggplot2
- about / Layers in ggplot2
- data / Data
- aesthetic mapping / Aesthetic mapping
- geometry attributes / Geometric
- stat / Stat
- position adjustment / Position adjustment
- legends
- about / Legends
- modifying / Legends
- title, modifying / The legend title
- keys, modifying / Legend keys and key labels
- key labels, modifying / Legend keys and key labels
- modifying, themes used / Themes for the legend
- linear regression
- about / Linear regression
- statistics, with faceting / Statistics with faceting
M
- mapping continuous
- and categorical variables, differences / Difference in mapping continuous and categorical variables
- mapproject() function / Further reading
- maps
- plotting, with ggplot2 / Plotting maps with ggplot2 and ggmap
- plotting, with ggmap / Plotting maps with ggplot2 and ggmap
- representing, with ggplot2 / Mapping representations with ggplot2 and maps
- representing, with ggmap / Representing maps with ggmap
- map_data() function
- URL / Further reading
- multiple plots, in one page
- arranging / Multiple plots in one page
- plots, arranging in rows and columns / Arranging plots in rows and columns
- plot position, specifying / Specifying the plot position
N
- Normalized Parent Coordinates (NPC) / Specifying the plot position
P
- packages
- about / Packages in R
- pie chart / A pie chart
- plot background
- modifying, themes used / Themes for the plot background
- plot layer by layer
- creating, with qplot() function / Creating a plot layer by layer with the ggplot function
- plot output
- multiple plots, in one page / Multiple plots in one page
- plots, saving to file / Saving plots to a file
- references / Further reading
- plots
- reference lines, adding / Adding text and reference lines to plots
- text, adding / Adding text and reference lines to plots
- with polar coordinates / Plots with polar coordinates
- pie chart / A pie chart
- bullseye chart / A bullseye chart
- coxcomb diagram / A coxcomb diagram
- plots, saving to file
- about / Saving plots to a file
- saving manually / Saving the plot manually
- without rendering plot / Saving the plot to a file without rendering it
- single plot, saving / Saving a single plot
- multiple plots, saving on same PDF file / Saving multiple plots on the same PDF file
- after rendering plot / Saving the plot after rendering it
- plotting environments
- about / The plotting environments in R
- plot title
- about / The plot title and axis labels
- modifying / The plot title and axis labels
- splitting / The plot title and axis labels
- polar coordinates
- plots, with / Plots with polar coordinates
- position adjustment
- about / Position adjustment
- of categorical data / Position adjustment of categorical data
- of continuous data / Position adjustment of continuous data
- position adjustment, of categorical data
- position_stack() function / Position adjustment of categorical data
- pushViewport() function / Arranging plots in rows and columns
Q
- qplot() basic function
- about / General aspects
- components / General aspects
- qplot() function
- URL / General aspects
- used, for creating plot layer by layer / Creating a plot layer by layer with the ggplot function
- and ggplot() function, equivalent coding / Equivalent coding between qplot and ggplot
- qplot function
- URL / Further reading
R
- reference lines
- adding, to plots / Adding text and reference lines to plots
- adding, facets used / Add text and reference lines with facets
- R project
- RStudio
- RStudio Server
- about / RStudio
S
- scales
- about / ggplot2 and the grammar of graphics, Scales, Exploring scales
- exploring / Exploring scales
- scale_color_hue() function / Aesthetic mapping
- scale_x_discrete() function, arguments
- name / The discrete axis
- breaks / The discrete axis
- labels / The discrete axis
- na.value / The discrete axis
- limits / The discrete axis
- guide / The discrete axis
- scatterplot matrix
- with GGally / Scatterplot matrix with GGally
- scatterplots
- about / Scatterplots, Scatterplots
- URL / Further reading
- smooth lines
- about / Smooth lines
- standard graphics
- standard plots
- about / Graphics and standard plots
- StatET
- about / Eclipse and StatET
- URL / Eclipse and StatET
- stat functions
- statistical transformations
- statistics
- adding / Adding statistics
- stat variables
- aesthetic mapping to / Mapping the aesthetic to new stat variables
- subset() function / Grid faceting
T
- text
- adding, to plots / Adding text and reference lines to plots
- adding, facets used / Add text and reference lines with facets
- themes
- about / Themes
- URL / Themes
- using / Themes
- used, for modifying legends / Themes for the legend
- used, for modifying title / Themes for the axis and title
- used, for modifying axis / Themes for the axis and title
- used, for modifying plot background / Themes for the plot background
- facets, using / Themes with facets
- time series
- about / Time series
- title
- modifying, themes used / Themes for the axis and title
- Trellis plots
- about / Lattice and Trellis plots
W
- wrap faceting / Wrap faceting