Book Image

Java Deep Learning Projects

Book Image

Java Deep Learning Projects

Overview of this book

Java is one of the most widely used programming languages. With the rise of deep learning, it has become a popular choice of tool among data scientists and machine learning experts. Java Deep Learning Projects starts with an overview of deep learning concepts and then delves into advanced projects. You will see how to build several projects using different deep neural network architectures such as multilayer perceptrons, Deep Belief Networks, CNN, LSTM, and Factorization Machines. You will get acquainted with popular deep and machine learning libraries for Java such as Deeplearning4j, Spark ML, and RankSys and you’ll be able to use their features to build and deploy projects on distributed computing environments. You will then explore advanced domains such as transfer learning and deep reinforcement learning using the Java ecosystem, covering various real-world domains such as healthcare, NLP, image classification, and multimedia analytics with an easy-to-follow approach. Expert reviews and tips will follow every project to give you insights and hacks. By the end of this book, you will have stepped up your expertise when it comes to deep learning in Java, taking it beyond theory and be able to build your own advanced deep learning systems.
Table of Contents (13 chapters)

Cancer genomics dataset description

Genomics data covers all data related to DNA on living things. Although in this thesis we will also use other types of data like transcriptomic data (RNA and miRNA), for convenience purposes, all data will be termed as genomics data. Research on human genetics found a huge breakthrough in recent years due to the success of the HGP (1984-2000) on sequencing the full sequence of human DNA.

One of the areas that have been helped a lot due to this is the research of all diseases related to genetics, including cancer. Due to various biomedical analyses done on DNA, there exist various types of -omics or genomics data. Here are some types of -omics data that were crucial to cancer analysis:

  • Raw sequencing data: This corresponds to the DNA coding of whole chromosomes. In general, every human has 24 types of chromosomes in each cell of their body,...