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Python Data Analysis, Second Edition - Second Edition

By : Armando Fandango

4 (4)

Python Data Analysis, Second Edition

4 (4)

By: Armando Fandango

Overview of this book

Data analysis techniques generate useful insights from small and large volumes of data. Python, with its strong set of libraries, has become a popular platform to conduct various data analysis and predictive modeling tasks. With this book, you will learn how to process and manipulate data with Python for complex analysis and modeling. We learn data manipulations such as aggregating, concatenating, appending, cleaning, and handling missing values, with NumPy and Pandas. The book covers how to store and retrieve data from various data sources such as SQL and NoSQL, CSV fies, and HDF5. We learn how to visualize data using visualization libraries, along with advanced topics such as signal processing, time series, textual data analysis, machine learning, and social media analysis. The book covers a plethora of Python modules, such as matplotlib, statsmodels, scikit-learn, and NLTK. It also covers using Python with external environments such as R, Fortran, C/C++, and Boost libraries.

Preface

Preface

What this book covers

What you need for this book

Who this book is for

Conventions

Reader feedback

Customer support

Free Chapter

1. Getting Started with Python Libraries

1. Getting Started with Python Libraries

Installing Python 3

Using IPython as a shell

Reading manual pages

Jupyter Notebook

NumPy arrays

A simple application

Where to find help and references

Listing modules inside the Python libraries

Visualizing data using Matplotlib

Summary

2. NumPy Arrays

2. NumPy Arrays

The NumPy array object

Creating a multidimensional array

Selecting NumPy array elements

NumPy numerical types

One-dimensional slicing and indexing

Manipulating array shapes

Creating array views and copies

Fancy indexing

Indexing with a list of locations

Indexing NumPy arrays with Booleans

Broadcasting NumPy arrays

Summary

References

3. The Pandas Primer

3. The Pandas Primer

Installing and exploring Pandas

The Pandas DataFrames

The Pandas Series

Querying data in Pandas

Statistics with Pandas DataFrames

Data aggregation with Pandas DataFrames

Concatenating and appending DataFrames

Joining DataFrames

Handling missing values

Dealing with dates

Pivot tables

Summary

References

4. Statistics and Linear Algebra

4. Statistics and Linear Algebra

Basic descriptive statistics with NumPy

Linear algebra with NumPy

Finding eigenvalues and eigenvectors with NumPy

NumPy random numbers

Creating a NumPy masked array

Summary

5. Retrieving, Processing, and Storing Data

5. Retrieving, Processing, and Storing Data

Writing CSV files with NumPy and Pandas

The binary .npy and pickle formats

Storing data with PyTables

Reading and writing Pandas DataFrames to HDF5 stores

Reading and writing to Excel with Pandas

Using REST web services and JSON

Reading and writing JSON with Pandas

Parsing RSS and Atom feeds

Parsing HTML with Beautiful Soup

Summary

Reference

6. Data Visualization

6. Data Visualization

The matplotlib subpackages

Basic matplotlib plots

Logarithmic plots

Scatter plots

Legends and annotations

Three-dimensional plots

Plotting in Pandas

Lag plots

Autocorrelation plots

Plot.ly

Summary

7. Signal Processing and Time Series

7. Signal Processing and Time Series

The statsmodels modules

Moving averages

Window functions

Defining cointegration

Autocorrelation

Autoregressive models

ARMA models

Generating periodic signals

Fourier analysis

Spectral analysis

Filtering

Summary

8. Working with Databases

8. Working with Databases

Lightweight access with sqlite3

Accessing databases from Pandas

SQLAlchemy

Pony ORM

Dataset - databases for lazy people

PyMongo and MongoDB

Storing data in Redis

Storing data in memcache

Apache Cassandra

Summary

9. Analyzing Textual Data and Social Media

9. Analyzing Textual Data and Social Media

Installing NLTK

About NLTK

Filtering out stopwords, names, and numbers

The bag-of-words model

Analyzing word frequencies

Naive Bayes classification

Sentiment analysis

Creating word clouds

Social network analysis

Summary

10. Predictive Analytics and Machine Learning

10. Predictive Analytics and Machine Learning

Preprocessing

Classification with logistic regression

Classification with support vector machines

Regression with ElasticNetCV

Support vector regression

Clustering with affinity propagation

Mean shift

Genetic algorithms

Neural networks

Decision trees

Summary

11. Environments Outside the Python Ecosystem and Cloud Computing

11. Environments Outside the Python Ecosystem and Cloud Computing

Exchanging information with Matlab/Octave

Installing rpy2 package

Interfacing with R

Sending NumPy arrays to Java

Integrating SWIG and NumPy

Integrating Boost and Python

Using Fortran code through f2py

PythonAnywhere Cloud

Summary

12. Performance Tuning, Profiling, and Concurrency

12. Performance Tuning, Profiling, and Concurrency

Profiling the code

Installing Cython

Calling C code

Creating a process pool with multiprocessing

Speeding up embarrassingly parallel for loops with Joblib

Comparing Bottleneck to NumPy functions

Performing MapReduce with Jug

Installing MPI for Python

IPython Parallel

Summary

A. Key Concepts

A. Key Concepts

B. Useful Functions

B. Useful Functions

Matplotlib

NumPy

Pandas

Scikit-learn

SciPy

C. Online Resources

C. Online Resources

IPython Parallel

IPython Parallel is the IPython API for parallel computing. We will set it up to use MPI for message passing. We may have to set environment variables as follows:

$ export LC_ALL=en_US.UTF-8
$ export LANG=en_US.UTF-8

Issue the following command at the command line:

$ ipython3 profile create --parallel --profile=mpi

The preceding command will create several files in the .ipython/profile_mpi folder located in your home directory.

Start a cluster that uses the MPI profile as follows:

$ ipcluster start --profile=mpi --engines=MPI --debug

The preceding command specifies that we are using the mpi profile and MPI engine with debug-level logging. We can now interact with the cluster from an IPython notebook. Start a notebook with plotting enabled and with NumPy, SciPy, and matplotlib automatically imported, as follows:

$ jupyter-notebook --profile=mpi --log-level=DEBUG

The preceding command uses the mpi profile with debug log level. The notebook for this example is stored in the IPythonParallel...

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Tech Concepts

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Programming languages

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