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Biostatistics with Python

Biostatistics with Python

By : Darko Medin
4.5 (4)
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Biostatistics with Python

Biostatistics with Python

4.5 (4)
By: Darko Medin

Overview of this book

This book leverages the author’s decade-long experience in biostatistics and data science to simplify the practical use of biostatistics with Python. The chapters show you how to clean and describe your data effectively, setting a solid foundation for accurate analysis and proficiency in biostatistical inference to help you draw meaningful conclusions from your data through hypothesis testing and effect size analysis. The book walks you through predictive modeling to harness the power of Python to create robust predictive analytics that can drive your research and professional projects forward. You'll explore clinical biostatistics, learn how to design studies, conduct survival analysis, and synthesize evidence from multiple studies with meta-analysis – skills that are crucial for making informed decisions based on comprehensive data reviews. The concluding chapters will enhance your ability to analyze biological variables, enabling you to perform detailed and accurate data analysis for biological research. This book's unique blend of biostatistics and Python helps you find practical solutions that make complex concepts easy to grasp and apply. By the end of this biostatistics book, you’ll have moved from theoretical knowledge to practical experience, allowing you to perform biostatistical analysis confidently and accurately.
Table of Contents (24 chapters)
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1
Part 1:Introduction to Biostatistics and Getting Started with Python
6
Part 2:Introduction to Python for Biostatistics – Methodology and Examples
12
Part 3:Clinical Study Design, Analysis, and Synthesizing Evidence
18
Part 4:Biological and Statistical Variables and Frameworks, and a Final Practical Project from the Field of Biology

Performing chi-squared tests in Python

In biostatistics, we often have categorical variables, and the data is frequently represented by the fact that it belongs to certain categories. In biostatistics, chi-square is often used for categorical variables (data). One such example is whether the lipids belong to a category within the normal or abnormal reference range.

According to the American Board of Family Medicine, the normal TG level is below 1.7 mmol/L, and all values above that are considered as increased TGs.

Note

You can refer to the aforementioned journal here: Pejic RN, Lee DT (May–Jun 2006). “Hypertriglyceridemia”. Journal of the American Board of Family Medicine, https://pubmed.ncbi.nlm.nih.gov/16672684/.

To understand this, let’s check the code where first, we will need to load the data and create a new column that will contain information about categories based on the reference threshold for the TG variable. Then, we can use that...

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Biostatistics with Python
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