Book Image

IPython Interactive Computing and Visualization Cookbook - Second Edition

By : Cyrille Rossant
Book Image

IPython Interactive Computing and Visualization Cookbook - Second Edition

By: Cyrille Rossant

Overview of this book

Python is one of the leading open source platforms for data science and numerical computing. IPython and the associated Jupyter Notebook offer efficient interfaces to Python for data analysis and interactive visualization, and they constitute an ideal gateway to the platform. IPython Interactive Computing and Visualization Cookbook, Second Edition contains many ready-to-use, focused recipes for high-performance scientific computing and data analysis, from the latest IPython/Jupyter features to the most advanced tricks, to help you write better and faster code. You will apply these state-of-the-art methods to various real-world examples, illustrating topics in applied mathematics, scientific modeling, and machine learning. The first part of the book covers programming techniques: code quality and reproducibility, code optimization, high-performance computing through just-in-time compilation, parallel computing, and graphics card programming. The second part tackles data science, statistics, machine learning, signal and image processing, dynamical systems, and pure and applied mathematics.
Table of Contents (19 chapters)
IPython Interactive Computing and Visualization CookbookSecond Edition
Contributors
Preface
Index

Segmenting an image


Image segmentation consists of partitioning an image into different regions that share certain characteristics. This is a fundamental task in computer vision, facial recognition, and medical imaging. For example, an image segmentation algorithm can automatically detect the contours of an organ in a medical image.

The scikit-image provides several segmentation methods. In this recipe, we will demonstrate how to segment an image containing different objects. This recipe is inspired by a scikit-image example available at http://scikit-image.org/docs/dev/user_guide/tutorial_segmentation.html

How to do it...

  1. Let's import the packages:

    >>> import numpy as np
        import matplotlib.pyplot as plt
        from skimage.data import coins
        from skimage.filters import threshold_otsu
        from skimage.segmentation import clear_border
        from skimage.morphology import label, closing, square
        from skimage.measure import regionprops
        from skimage.color import lab2rgb
        %matplotlib...